Journal Paper

1. "Phylogenetic, Structural, and Immunogenic Analysis of Algal L-Asparaginases: Potential Alternatives for ALL Treatment"
   Mahdis Mofidi, Mohammad Yaghoubi-Avini
   journal of plant, algae, and environment, Vol. 9, pp.82-93, 2025
2. "Efficient in vivo Directed Evolution in E. coli using a Gibson Assembly-Adapted EvolvR System"
   Yousef Vatanparast, Gholamhossein Ebrahimipour, Mohammad Yaghoubi-Avini
   Microbiology, Metabolites and Biotechnology, Vol. 8, pp.65-72, 2025
3. "Isolation, characterization, and bioremediation potential of oil-degrading bacteria from contaminated soils in Shiraz and Bandar Abbas, Iran"
   Sara Shokranian, Morteza Yousefzadi, Narges Amrollahi Biuki, Mohammad Yaghoubi-Avini, Majedeh TaheriAkerdi
   Scientific Reports, Vol. 15, pp.1-13, 2025
4. "Gastric microbiome-derived Lacticaseibacillus casei strain RIGLD MG-1 relieves Helicobacter pylori-induced inflammation in gastric epithelial cells in vitro"
   Masoomeh Ghasemipoor Nokandeh, Mohammad Yaghoubi-Avini, Masoumeh Azimirad1, Ali Nabavi-Rad, Mehdi Azizmohammad Looha, Michael Doulberis, Christian Schulz, Abbas Yadegar
   MOLECULAR BIOLOGY REPORTS, Vol. 52, pp.1-14, 2025
5. "Enhancement of Xylose Utilization in Various Escherichia coli Strains Through Adaptive Laboratory Evolution (ALE) Experiments"
   Yousef Vatanparast, Gholamhossein Ebrahimipour, Mohammad Yaghoubi-Avini
   journal of plant, algae, and environment, Vol. 8, pp.1441-1454, 2024
6. "A smart nanopaper sensor for optical diagnosis of Helicobacter pylori infection"
   Zeinab Asghari Adib, Amir Reza Sharifi, Mohammad Ali Kiani, Hossein Yousefi, Daniel Horak, Uliana Kostiv, Ali Nabavi-Rad, Abbas Yadegar, Mohammad Yaghoubi-Avini, Hamed Golmohammadi
   Materials Advances, Vol. 4, pp.4965-4974, 2023
7. "Studies on optimization of anti-tumor L-asparaginase production using Bacillus subtilis isolated from soil of the East Azerbaijan Province"
   Nasrin Gholami, Gholamhossein Ebrahimipour, Mohammad Yaghoubi-Avini
   Vol. 11, pp.1-12, 2023
8. "Isolation of Nannocystis species from Iran and exploring their natural products"
   Azam Moradi, Mohammad Yaghoubi-Avini, Joachim Wink
   ARCHIVES OF MICROBIOLOGY, Vol. 204, 2022
9. "Isolation and Characterization of Glutaminase-free L-asparaginase a Produced by Staphylococcus sp. MGM1"
   Gholamhossein Ebrahimipour, Mohammad Yaghoubi-Avini, MAHTAB GHORBANMOVAHED
   scimedicine journal, Vol. 2, pp.46-55, 2020
10. "Carbon dots Sodium alginate hydrogel: A novel tetracycline fluorescent sensor and adsorber"
    Hamide Ehtesabi, Shabnam Roshani, Zeinab Bagheri, Mohammad Yaghoubi-Avini
    Journal of Environmental Chemical Engineering, Vol. 7, 2019
11. "Application of three-dimensional graphene hydrogels for removal of ofloxacin from aqueous solutions"
    Hamide Ehtesabi, Zeinab Bagheri, Mohammad Yaghoubi-Avini
    Environmental Nanotechnology, Monitoring and Management, Vol. 12, 2019
12. "Investigating the effect of photodynamic inactivation methods on oral-dental biofilms: a review study"
    Reza Aboukazempour Amiri, Fedora Khatibi Shahidi, Mohammad Yaghoubi-Avini, Shirin Farivar, Afshan Shirkavand
    Vol. 21, pp.30-50, 2025
13. "Isolation and Identification of a Myxobacterium Producing Myxothiazol and Althiomycin from Iran Soil"
    Azam Moradi, Mohammad Yaghoubi-Avini, Gholamhossein Ebrahimipour, Alireza Ghassempour
    Vol. 32, pp.133-146, 2019

Conference Paper

1. "Microscopic Classification of Microbial Species Using Deep Learning"
   Mahdiar Mansouri, Mohsen Ebrahimi Moghaddam, Mohammad Yaghoubi-Avini
   , pp.1-1, 2024
2. "Isolation and characterization Lacticaseibacillus casei RIGLD MG-1 from the gasteric microbiome of a healthy human subject"
   Masoomeh Ghasemipoor Nokandeh, Mohammad Yaghoubi-Avini, Abbas Yadegar
   24th IRAN'S INTERNATIONAL CONGRESS OF MICROBIOLOGY, 2023
3. "USING THE GIBSON ASSEMBLY METHOD TO INSERT GRNA AND ASSEMBLE THE PLASMID"
   Yousef Vatanparast, Gholamhossein Ebrahimipour, Mohammad Yaghoubi-Avini
   5. internatioinal food, agriculture and veterinary sciences congress, pp.35-35, 2023
4. "Isolation and charcterization of novel bacteria produced exteracellular L-asparaginase enzyme"
   Zohreh Safari, Mohammad Yaghoubi-Avini, Farshad Darvishi, Gholamhossein Ebrahimipour
   14 th internatioinal congress on medical lab. and clinic, 2023
5. "Effect of Different Hydrophilic Carbon Sources for Enhanced Biosurfactant Production by Rhodotorula mucilaginosa"
   Hale Rostami, Mohammad Yaghoubi-Avini, Gholamhossein Ebrahimipour
   6th International and 14th National Biotechnology Congress, pp.3085-3089, 2025
6. "mRNA Vaccines: Platform Advances, Challenges and Future Directions"
   Arefe Lotfi, Mohammad Yaghoubi-Avini, Mohammad Ali Sheikh Beig Goharrizi
   6th International and 14th National Biotechnology Congress, 2025
7. "using CRISPR-guided DNA polymerases to diversify the rpsL gene to create high spectinomycin resistance E. coli"
   Yousef Vatanparast, Gholamhossein Ebrahimipour, Mohammad Yaghoubi-Avini
   5th international and 17th Iranian Genetic Congress, 2023
8. "Phylogenetic study of L-asparaginase II (AsnB) in the bacteria domain and fungi kingdom"
   Mahdis Mofidi, Maryam Azimzadeh Irani, Gholamhossein Ebrahimipour, Mohammad Yaghoubi-Avini
   2nd International and 11th National Iranian Conference On Bioinformatics, 2023