Journal Paper

1. "Phylogenetic, Structural, and Immunogenic Analysis of Algal L-Asparaginases: Potential Alternatives for ALL Treatment"
   Mahdis Mofidi, Mohammad Yaghoubi-Avini
   journal of plant, algae, and environment, Vol. 9, pp.82-93, 2025
2. "Gastric microbiome-derived Lacticaseibacillus casei strain RIGLD MG-1 relieves Helicobacter pylori-induced inflammation in gastric epithelial cells in vitro"
   Masoomeh Ghasemipoor Nokandeh, Mohammad Yaghoubi-Avini, Masoumeh Azimirad1, Ali Nabavi-Rad, Mehdi Azizmohammad Looha, Michael Doulberis, Christian Schulz, Abbas Yadegar
   MOLECULAR BIOLOGY REPORTS, Vol. 52, pp.1-14, 2025
3. "Enhancement of Xylose Utilization in Various Escherichia coli Strains Through Adaptive Laboratory Evolution (ALE) Experiments"
   Yousef Vatanparast, Gholamhossein Ebrahimipour, Mohammad Yaghoubi-Avini
   journal of plant, algae, and environment, Vol. 8, pp.1441-1454, 2024
4. "A smart nanopaper sensor for optical diagnosis of Helicobacter pylori infection"
   Zeinab Asghari Adib, Amir Reza Sharifi, Mohammad Ali Kiani, Hossein Yousefi, Daniel Horak, Uliana Kostiv, Ali Nabavi-Rad, Abbas Yadegar, Mohammad Yaghoubi-Avini, Hamed Golmohammadi
   Materials Advances, Vol. 4, pp.4965-4974, 2023
5. "Studies on optimization of anti-tumor L-asparaginase production using Bacillus subtilis isolated from soil of the East Azerbaijan Province"
   Nasrin Gholami, Gholamhossein Ebrahimipour, Mohammad Yaghoubi-Avini
   Vol. 11, pp.1-12, 2023
6. "Isolation of Nannocystis species from Iran and exploring their natural products"
   Azam Moradi, Mohammad Yaghoubi-Avini, Joachim Wink
   ARCHIVES OF MICROBIOLOGY, Vol. 204, 2022
7. "Isolation and Characterization of Glutaminase-free L-asparaginase a Produced by Staphylococcus sp. MGM1"
   Gholamhossein Ebrahimipour, Mohammad Yaghoubi-Avini, MAHTAB GHORBANMOVAHED
   scimedicine journal, Vol. 2, pp.46-55, 2020
8. "Application of three-dimensional graphene hydrogels for removal of ofloxacin from aqueous solutions"
   Hamide Ehtesabi, Zeinab Bagheri, Mohammad Yaghoubi-Avini
   Environmental Nanotechnology, Monitoring and Management, Vol. 12, 2019
9. "Carbon dots Sodium alginate hydrogel: A novel tetracycline fluorescent sensor and adsorber"
   Hamide Ehtesabi, Shabnam Roshani, Zeinab Bagheri, Mohammad Yaghoubi-Avini
   Journal of Environmental Chemical Engineering, Vol. 7, 2019
10. "Investigating the effect of photodynamic inactivation methods on oral-dental biofilms: a review study"
    Reza Aboukazempour Amiri, Fedora Khatibi Shahidi, Mohammad Yaghoubi-Avini, Shirin Farivar, Afshan Shirkavand
    Vol. 21, pp.30-50, 2025
11. "Isolation and Identification of a Myxobacterium Producing Myxothiazol and Althiomycin from Iran Soil"
    Azam Moradi, Mohammad Yaghoubi-Avini, Gholamhossein Ebrahimipour, Alireza Ghassempour
    Vol. 32, pp.133-146, 2019

Conference Paper

1. "Microscopic Classification of Microbial Species Using Deep Learning"
   Mahdiar Mansouri, Mohsen Ebrahimi Moghaddam, Mohammad Yaghoubi-Avini
   , pp.1-1, 2024
2. "Isolation and characterization Lacticaseibacillus casei RIGLD MG-1 from the gasteric microbiome of a healthy human subject"
   Masoomeh Ghasemipoor Nokandeh, Mohammad Yaghoubi-Avini, Abbas Yadegar
   24th IRAN'S INTERNATIONAL CONGRESS OF MICROBIOLOGY, 2023
3. "USING THE GIBSON ASSEMBLY METHOD TO INSERT GRNA AND ASSEMBLE THE PLASMID"
   Yousef Vatanparast, Gholamhossein Ebrahimipour, Mohammad Yaghoubi-Avini
   5. internatioinal food, agriculture and veterinary sciences congress, pp.35-35, 2023
4. "Isolation and charcterization of novel bacteria produced exteracellular L-asparaginase enzyme"
   Zohreh Safari, Mohammad Yaghoubi-Avini, Farshad Darvishi, Gholamhossein Ebrahimipour
   14 th internatioinal congress on medical lab. and clinic, 2023
5. "using CRISPR-guided DNA polymerases to diversify the rpsL gene to create high spectinomycin resistance E. coli"
   Yousef Vatanparast, Gholamhossein Ebrahimipour, Mohammad Yaghoubi-Avini
   5th international and 17th Iranian Genetic Congress, 2023
6. "Phylogenetic study of L-asparaginase II (AsnB) in the bacteria domain and fungi kingdom"
   Mahdis Mofidi, Maryam Azimzadeh Irani, Gholamhossein Ebrahimipour, Mohammad Yaghoubi-Avini
   2nd International and 11th National Iranian Conference On Bioinformatics, 2023